Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1986

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10354 and 10355 are separated by 690 nucleotides mRNA_1986: 10354 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 673,978 to 676,416 10354 mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677,107 to 679,198 10355

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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673,624 - +0.3
673,653 + +0.1
673,666 - +0.4
673,675 - +0.3
673,759 + +1.0
673,801 + -0.6
673,809 + -0.2
673,812 - -0.6
673,986 - +1.3
674,128 - +3.9
675,505 - 10354 mRNA_1986 0.63 -0.1
676,428 - +0.1
676,566 - -0.0
676,605 + +0.1
676,729 - -1.2
676,834 - -1.6
676,890 + +0.9
677,009 - +1.8
677,173 - +0.2
677,187 + +0.7
677,320 - 10355 mRNA_1987 0.10 +0.3

Or see this region's nucleotide sequence