Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2001

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10368 and 10369 are separated by 113 nucleotides mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707,641 to 708,923 10368 mRNA_2001: 10369 - Hypothetical Protein, at 709,037 to 710,403 10369

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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708,062 - 10368 mRNA_2000 0.33 +2.1
708,079 - 10368 mRNA_2000 0.34 -0.6
708,213 + 10368 mRNA_2000 0.45 -2.2
708,247 + 10368 mRNA_2000 0.47 +0.4
708,508 + 10368 mRNA_2000 0.68 +0.1
708,514 + 10368 mRNA_2000 0.68 +0.9
708,615 - 10368 mRNA_2000 0.76 +0.9
708,638 + 10368 mRNA_2000 0.78 +0.9
708,650 - 10368 mRNA_2000 0.79 -1.6
708,654 - 10368 mRNA_2000 0.79 -0.6
708,662 - 10368 mRNA_2000 0.80 +1.1
708,812 + +1.3
708,828 + +0.6
708,830 + +2.0
708,947 - +0.2
708,968 + +0.7
708,984 + +0.1
709,074 - +2.1
709,098 + +2.7
709,113 - +0.7
709,115 + +0.8
709,117 - +1.2
709,123 - +3.0
709,394 - 10369 mRNA_2001 0.26 +2.6
710,099 - 10369 mRNA_2001 0.78 +0.1
710,272 - +0.4
710,872 + -0.3
711,168 - +1.5
711,168 - -1.3
711,328 + -0.1

Or see this region's nucleotide sequence