Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2034

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10401 and 10402 are separated by 825 nucleotides10402 and 10403 are separated by 171 nucleotides mRNA_2033: 10401 - K09595 HM13 minor histocompatibility antigen H13, at 796,887 to 798,543 10401 mRNA_2034: 10402 - HMMPfam-Spherulation-specific family 4-PF12138, at 799,369 to 800,999 10402 mRNA_2035: 10403 - K14824 ERB1, BOP1 ribosome biogenesis protein ERB1, at 801,171 to 804,014 10403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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798,432 + +0.3
798,557 + +1.4
798,558 - +0.6
798,570 - -1.2
798,581 - +0.3
798,683 - +0.4
798,723 + +0.0
798,898 + +0.7
798,929 - +1.1
799,017 + +0.5
799,042 + -0.2
799,180 - -0.0
799,195 + -1.0
799,247 + -0.1
799,274 + +0.1
799,339 + -0.8
799,461 + -0.1
799,493 + +0.1
799,522 - +0.5
799,904 + 10402 mRNA_2034 0.33 +1.5
799,924 - 10402 mRNA_2034 0.34 +2.0
800,003 + 10402 mRNA_2034 0.39 +1.2
800,700 + 10402 mRNA_2034 0.82 -0.6
800,989 - +1.4

Or see this region's nucleotide sequence