Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2061

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10428 and 10429 are separated by 346 nucleotides10429 and 10430 are separated by 763 nucleotides mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855,890 to 857,453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857,800 to 859,276 10429 mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860,040 to 861,424 10430

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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857,044 + 10428 mRNA_2060 0.74 -2.6
857,100 - 10428 mRNA_2060 0.77 -1.8
857,125 - 10428 mRNA_2060 0.79 -3.6
857,222 + 10428 mRNA_2060 0.85 -1.8
857,368 - -3.6
857,393 - -0.3
857,528 - +1.9
857,667 - +0.5
857,813 - +2.1
857,815 + -2.2
857,831 + -0.4
858,388 + 10429 mRNA_2061 0.40 -0.5
858,706 + 10429 mRNA_2061 0.61 -1.1
859,011 + 10429 mRNA_2061 0.82 +0.6
859,036 + 10429 mRNA_2061 0.84 -0.1
859,284 - +0.4
859,294 + +0.4
859,426 - -0.3
859,440 - +0.1
859,444 - +1.0
859,448 + +0.2
859,580 + +1.4
859,598 + -0.6
859,717 - +0.7
859,727 - -1.1
859,727 - +0.0
859,833 - +0.3
859,880 - -1.9
859,992 - +0.9
860,009 + -0.7
860,158 + -1.3

Or see this region's nucleotide sequence