Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2082

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10449 and 10450 are separated by 333 nucleotides mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560 10449 mRNA_2082: 10450 - Hypothetical Protein, at 27,894 to 29,242 10450

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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27,021 + 10449 mRNA_2081 0.73 -5.8
27,045 + 10449 mRNA_2081 0.74 +0.7
27,196 - 10449 mRNA_2081 0.82 +0.1
27,445 - +0.4
27,469 - +1.8
27,480 + +0.0
27,512 + +1.6
27,564 + +0.8
27,623 - +1.4
27,624 - +1.0
27,741 + +0.6
27,745 - -1.0
27,752 - -1.3
27,791 + +0.2
27,813 - -1.7
27,818 + -0.3
27,828 + -0.3
27,910 - +0.3
27,987 - +0.7
28,096 + 10450 mRNA_2082 0.15 -1.3
28,099 - 10450 mRNA_2082 0.15 -0.1
28,258 + 10450 mRNA_2082 0.27 +1.4
28,415 - 10450 mRNA_2082 0.39 -0.2
28,553 - 10450 mRNA_2082 0.49 +1.3
28,789 - 10450 mRNA_2082 0.66 -0.6
28,953 - 10450 mRNA_2082 0.79 +0.4
29,113 - +0.2
29,256 + +0.3
29,512 + +0.2
29,516 - +1.0
29,525 - -0.5
29,526 + +1.7
29,530 + +1.0
29,532 - +0.2
29,535 - +0.3
29,551 - +0.7
29,700 - -0.9
29,708 + +0.5
29,710 + +1.2
29,711 + -0.0
29,738 + +0.3
29,818 - +1.1
29,851 + +1.2
29,867 + +0.0
29,886 - -0.7

Or see this region's nucleotide sequence