Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2084

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10451 and 10452 are separated by 519 nucleotides mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30,266 to 34,170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34,690 to 37,198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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33,816 + +2.0
33,833 + -1.0
33,961 + -0.6
33,964 - +0.2
33,973 + +0.7
34,091 - +1.4
34,118 + +0.5
34,215 - -0.7
34,266 - -0.6
34,369 + +0.5
34,692 - +2.0
34,980 + 10452 mRNA_2084 0.12 +0.5
35,015 + 10452 mRNA_2084 0.13 -1.6
35,019 - 10452 mRNA_2084 0.13 -1.9
35,150 + 10452 mRNA_2084 0.18 -0.7
35,258 - 10452 mRNA_2084 0.23 -0.0
35,390 - 10452 mRNA_2084 0.28 +0.4
35,754 + 10452 mRNA_2084 0.42 +0.3
35,973 - 10452 mRNA_2084 0.51 -0.1
35,991 + 10452 mRNA_2084 0.52 -1.1
35,991 + 10452 mRNA_2084 0.52 +0.1
36,011 - 10452 mRNA_2084 0.53 +1.7
36,042 + 10452 mRNA_2084 0.54 -0.1
36,149 + 10452 mRNA_2084 0.58 -0.1
36,182 + 10452 mRNA_2084 0.59 +0.9
36,326 + 10452 mRNA_2084 0.65 +0.5
36,373 + 10452 mRNA_2084 0.67 -0.8
36,410 + 10452 mRNA_2084 0.69 -0.6
36,456 - 10452 mRNA_2084 0.70 -0.5
36,559 + 10452 mRNA_2084 0.74 +2.0
37,025 - +2.0
37,197 - -1.0
37,481 - +0.2
37,483 + -0.4
37,492 - +0.6
37,496 + +0.1
37,513 - -0.4
37,569 + +0.4
37,615 + +0.1
37,615 - -0.2
37,631 + +0.3
37,635 - -0.6
37,638 + -0.3
37,639 + -0.3
37,640 - +0.0
37,644 + -1.3
37,830 - +1.2
37,837 + -0.6
37,846 + -1.1
37,923 + +1.8
37,940 + +0.3
37,940 - +0.3
38,103 - -0.3

Or see this region's nucleotide sequence