Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2086

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10453 and 10454 are separated by 457 nucleotides10454 and 10455 are separated by 172 nucleotides mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38,392 to 39,762 10453 mRNA_2086: 10454 - Hypothetical Protein, at 40,220 to 41,311 10454 mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41,484 to 43,178 10455

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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39,228 - 10453 mRNA_2085 0.61 +0.2
39,379 - 10453 mRNA_2085 0.72 +0.0
39,675 - +0.3
40,069 + +0.6
40,077 - +0.4
40,209 - +2.7
40,228 + +0.2
40,312 + -1.2
40,315 - -2.3
40,695 + 10454 mRNA_2086 0.43 +0.8
40,700 - 10454 mRNA_2086 0.44 -0.8
40,718 - 10454 mRNA_2086 0.46 -0.4
40,718 + 10454 mRNA_2086 0.46 +0.6
40,810 + 10454 mRNA_2086 0.54 +1.0
40,839 + 10454 mRNA_2086 0.57 -0.8
40,840 + 10454 mRNA_2086 0.57 +1.1
40,844 - 10454 mRNA_2086 0.57 -0.8
40,853 - 10454 mRNA_2086 0.58 -0.2
40,997 + 10454 mRNA_2086 0.71 +0.5
40,999 + 10454 mRNA_2086 0.71 +0.4
41,003 - 10454 mRNA_2086 0.72 -1.4
41,014 - 10454 mRNA_2086 0.73 +0.4
41,041 + 10454 mRNA_2086 0.75 +0.3
41,045 - 10454 mRNA_2086 0.76 +0.1
41,055 - 10454 mRNA_2086 0.76 +1.9
41,136 - 10454 mRNA_2086 0.84 +0.3
41,145 - 10454 mRNA_2086 0.85 +0.0
41,173 + 10454 mRNA_2086 0.87 +0.7
41,360 - +0.3
42,170 + 10455 mRNA_2087 0.40 +0.3

Or see this region's nucleotide sequence