Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2153

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10520 and 10521 are separated by 120 nucleotides10521 and 10522 are separated by 234 nucleotides mRNA_2152: 10520 - KOG2887 Membrane protein involved in ER to Golgi transport, at 199,277 to 200,467 10520 mRNA_2153: 10521 - K14003 PREB, SEC12 prolactin regulatory element-binding protein, at 200,588 to 202,509 10521 mRNA_2154: 10522 - KOG2689 Predicted ubiquitin regulatory protein, at 202,744 to 204,130 10522

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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199,620 + 10520 mRNA_2152 0.29 +0.4
199,625 + 10520 mRNA_2152 0.29 +0.0
199,780 + 10520 mRNA_2152 0.42 +0.1
199,793 - 10520 mRNA_2152 0.43 +2.7
199,914 - 10520 mRNA_2152 0.53 +1.1
200,040 - 10520 mRNA_2152 0.64 -0.6
200,047 + 10520 mRNA_2152 0.65 +0.1
200,049 + 10520 mRNA_2152 0.65 -1.1
200,223 - 10520 mRNA_2152 0.79 +0.1
200,494 - +0.2
200,502 - +0.4
200,502 - -1.5
202,526 - +0.9
202,554 + +0.0
202,590 + -0.8
202,636 - +1.4
202,680 - +0.5
202,685 - +0.8
202,685 + -0.6
203,123 - 10522 mRNA_2154 0.27 -0.0
203,132 - 10522 mRNA_2154 0.28 -0.2
203,282 - 10522 mRNA_2154 0.39 +0.2
203,402 + 10522 mRNA_2154 0.47 +1.6

Or see this region's nucleotide sequence