Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2169

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10536 and 10537 are separated by 410 nucleotides10537 and 10538 are separated by 84 nucleotides mRNA_2168: 10536 - Hypothetical Protein, at 237,845 to 238,808 10536 mRNA_2169: 10537 - Hypothetical Protein, at 239,219 to 240,668 10537 mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240,753 to 243,794 10538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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238,355 - 10536 mRNA_2168 0.53 -3.3
238,401 + 10536 mRNA_2168 0.58 -0.0
238,421 - 10536 mRNA_2168 0.60 +0.2
238,525 - 10536 mRNA_2168 0.71 -1.6
238,656 + 10536 mRNA_2168 0.84 -0.6
238,665 + 10536 mRNA_2168 0.85 -0.8
238,670 - 10536 mRNA_2168 0.86 -0.3
238,705 - 10536 mRNA_2168 0.89 +2.9
238,947 - -1.0
238,958 + +0.0
239,120 + -1.0
239,125 - +0.2
239,360 - -2.2
239,387 - 10537 mRNA_2169 0.12 +0.6
239,419 + 10537 mRNA_2169 0.14 +1.3
239,550 + 10537 mRNA_2169 0.23 +1.5
239,734 + 10537 mRNA_2169 0.36 +0.5
239,844 + 10537 mRNA_2169 0.43 -0.8
239,905 - 10537 mRNA_2169 0.47 +1.4
240,128 + 10537 mRNA_2169 0.63 -0.1
240,181 - 10537 mRNA_2169 0.66 +0.7
240,277 - 10537 mRNA_2169 0.73 -2.9
240,336 - 10537 mRNA_2169 0.77 -1.0
240,438 - 10537 mRNA_2169 0.84 +2.0
240,602 + -0.3
240,823 - -1.2
240,909 + +0.2
240,914 + +1.1
241,049 + -0.7
241,314 + 10538 mRNA_2170 0.18 +0.9
241,632 - 10538 mRNA_2170 0.29 +1.8
241,657 + 10538 mRNA_2170 0.30 -0.2

Or see this region's nucleotide sequence