Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2172

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10539 and 10540 are separated by 385 nucleotides10540 and 10541 are separated by 524 nucleotides mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244,214 to 249,218 10539 mRNA_2172: 10540 - K00968 PCYT1 choline-phosphate cytidylyltransferase, at 249,604 to 252,159 10540 mRNA_2173: 10541 - K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6, at 252,684 to 253,574 10541

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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248,650 + 10539 mRNA_2171 0.89 -0.2
248,656 + 10539 mRNA_2171 0.89 +1.5
248,956 - -0.1
248,969 - +0.3
249,116 - -0.2
249,242 - +0.6
249,271 + +0.9
249,515 + +0.7
249,647 - +0.0
250,700 + 10540 mRNA_2172 0.43 -2.1
250,705 - 10540 mRNA_2172 0.43 +0.8
250,785 - 10540 mRNA_2172 0.46 +1.4
250,827 + 10540 mRNA_2172 0.48 +0.9
250,838 + 10540 mRNA_2172 0.48 -0.2
250,998 + 10540 mRNA_2172 0.55 +0.0
251,308 + 10540 mRNA_2172 0.67 +0.7
252,595 + +0.5
252,896 - 10541 mRNA_2173 0.24 -2.1
252,922 - 10541 mRNA_2173 0.27 +0.5

Or see this region's nucleotide sequence