Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2177

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10545 and 10546 are separated by 405 nucleotides mRNA_2177: 10545 - Hypothetical Protein, at 264,370 to 265,030 10545 mRNA_2178: 10546 - Hypothetical Protein, at 265,436 to 267,124 10546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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263,499 - +0.6
263,504 + +0.4
263,615 + -0.4
263,623 - +0.1
263,773 + -2.0
263,794 - +0.3
263,816 + -0.2
263,816 + -1.4
263,816 + +1.2
263,819 - -2.2
263,924 - +0.3
263,955 + -1.2
263,966 + +0.6
263,998 + +0.3
264,101 + -0.4
264,247 + +0.2
264,383 - -0.1
264,534 + 10545 mRNA_2177 0.25 +0.5
264,547 - 10545 mRNA_2177 0.27 -1.2
264,686 + 10545 mRNA_2177 0.48 +1.2
264,790 - 10545 mRNA_2177 0.64 +0.8
264,972 + +0.3
265,429 + +0.3
265,603 + -0.7
265,603 + -0.8
265,629 + 10546 mRNA_2178 0.11 +1.6
265,661 - 10546 mRNA_2178 0.13 +0.1
265,697 - 10546 mRNA_2178 0.15 +0.7
266,012 - 10546 mRNA_2178 0.34 +0.2

Or see this region's nucleotide sequence