Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2182

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10550 and 10551 are separated by 357 nucleotides mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065 10550 mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019 10551

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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281,748 + -1.1
281,795 - +0.8
281,801 - +0.4
281,924 - -0.7
282,256 + -0.4
282,373 - -1.3
282,379 + +0.3
282,389 - +1.5
282,515 - -1.1
282,651 - -0.2
282,663 + -0.5
282,666 - +0.3
282,677 + +1.0
282,686 + +1.7
282,810 + -0.4
282,927 + 10550 mRNA_2182 0.14 +0.0
282,950 + 10550 mRNA_2182 0.16 +0.2
283,092 - 10550 mRNA_2182 0.27 -1.4
284,083 + -0.4
284,121 - +1.1
284,124 + -1.2
284,251 + +0.6
284,973 - 10551 mRNA_2183 0.34 -0.4
284,978 - 10551 mRNA_2183 0.35 +0.5

Or see this region's nucleotide sequence