Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2183

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10550 and 10551 are separated by 357 nucleotides10551 and 10552 are separated by 216 nucleotides mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065 10550 mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019 10551 mRNA_2184: 10552 - Hypothetical Protein, at 286,236 to 287,917 10552

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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284,083 + -0.4
284,121 - +1.1
284,124 + -1.2
284,251 + +0.6
284,973 - 10551 mRNA_2183 0.34 -0.4
284,978 - 10551 mRNA_2183 0.35 +0.5
285,205 - 10551 mRNA_2183 0.49 +1.3
285,280 + 10551 mRNA_2183 0.54 -0.6
285,570 - 10551 mRNA_2183 0.72 -0.0
285,619 - 10551 mRNA_2183 0.75 +0.2
285,688 - 10551 mRNA_2183 0.79 +1.3
285,833 + 10551 mRNA_2183 0.88 +2.4
285,853 - 10551 mRNA_2183 0.90 -1.1
286,012 + +0.2
286,124 - -0.3
286,134 - +1.7
286,135 - +0.1
286,171 - -0.1
286,189 - -0.6
286,206 - +0.8
286,249 + -0.2
286,272 + +1.2
286,373 - -1.0
286,405 + 10552 mRNA_2184 0.10 -0.9
286,697 + 10552 mRNA_2184 0.27 -0.4
286,724 - 10552 mRNA_2184 0.29 +2.2

Or see this region's nucleotide sequence