Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2218

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10585 and 10586 are separated by 152 nucleotides10586 and 10587 are separated by 499 nucleotides mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382,345 to 384,541 10585 mRNA_2218: 10586 - SUPERFAMILY--SSF52047, at 384,694 to 386,223 10586 mRNA_2219: 10587 - Hypothetical Protein, at 386,723 to 388,300 10587

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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383,742 - 10585 mRNA_2217 0.64 -0.0
383,882 + 10585 mRNA_2217 0.70 -0.6
383,904 - 10585 mRNA_2217 0.71 -1.0
384,124 - 10585 mRNA_2217 0.81 -2.4
384,288 + 10585 mRNA_2217 0.88 -2.0
384,459 + +0.1
384,511 + +2.3
385,121 + 10586 mRNA_2218 0.28 +1.4
385,242 - 10586 mRNA_2218 0.36 -0.1
385,274 + 10586 mRNA_2218 0.38 -1.9
385,428 - 10586 mRNA_2218 0.48 +0.2
385,443 - 10586 mRNA_2218 0.49 +0.9
385,554 + 10586 mRNA_2218 0.56 +1.0
385,702 - 10586 mRNA_2218 0.66 +1.7
385,712 + 10586 mRNA_2218 0.67 +0.6
385,718 - 10586 mRNA_2218 0.67 -1.2
385,734 + 10586 mRNA_2218 0.68 -0.4
385,912 + 10586 mRNA_2218 0.80 -0.9
386,072 + +0.4
386,072 + -0.5
386,307 - -1.0
386,325 + +0.3
386,337 + +0.6
386,498 + +0.3
386,780 + -0.3
386,960 - 10587 mRNA_2219 0.15 +0.3
387,063 - 10587 mRNA_2219 0.22 -0.1
387,216 - 10587 mRNA_2219 0.31 +1.7

Or see this region's nucleotide sequence