Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2274

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10641 and 10642 are separated by 146 nucleotides10642 and 10643 are separated by 332 nucleotides mRNA_2273: 10641 - K14787 MRD1, RBM19 multiple RNA-binding domain-containing protein 1, at 496,371 to 499,098 10641 mRNA_2274: 10642 - KOG2352 Predicted spermine/spermidine synthase, at 499,245 to 500,264 10642 mRNA_2275: 10643 - HMMPfam-MAPEG family-PF01124,SUPERFAMILY--SSF161084, at 500,597 to 501,422 10643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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499,152 + -0.0
499,162 + +0.3
499,167 - +1.7
499,169 - +0.6
499,171 + +0.2
499,173 - +0.4
499,195 - +0.4
499,203 + +0.7
499,239 + +1.7
499,353 + 10642 mRNA_2274 0.11 +1.0
499,608 - 10642 mRNA_2274 0.36 +0.7
499,615 + 10642 mRNA_2274 0.36 +0.7
499,625 - 10642 mRNA_2274 0.37 +0.5
499,912 + 10642 mRNA_2274 0.65 -0.4
500,061 - 10642 mRNA_2274 0.80 +1.0
500,071 - 10642 mRNA_2274 0.81 +1.1
500,248 + +0.4
500,361 - -0.1
500,397 + -1.0
500,398 + +0.4
500,401 + -0.1
500,434 + +0.3
500,522 - -0.9
500,532 + +1.5
500,537 + -0.1
500,540 + +0.8
500,556 - +0.2
500,663 + -0.8
500,668 + +0.1
500,688 - 10643 mRNA_2275 0.11 +1.2
500,835 - 10643 mRNA_2275 0.29 -1.5
500,986 - 10643 mRNA_2275 0.47 +0.2
501,124 + 10643 mRNA_2275 0.64 +0.2

Or see this region's nucleotide sequence