Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2283

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10651 and 10652 are separated by 591 nucleotides mRNA_2283: 10651 - KOG1674 Cyclin, at 524,604 to 524,992 10651 mRNA_2284: 10652 - Hypothetical Protein, at 525,584 to 526,132 10652

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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523,659 - -0.4
523,959 - -2.2
524,081 + +1.2
524,309 + +0.3
524,722 + 10651 mRNA_2283 0.30 +0.1
524,847 + 10651 mRNA_2283 0.62 +1.4
524,853 + 10651 mRNA_2283 0.64 -0.4
525,090 + +0.3
525,140 + +0.4
525,271 - +0.9
525,410 + +0.5
525,575 + -0.3
525,576 - -1.9
525,589 + -0.1
525,652 - 10652 mRNA_2284 0.12 +0.6
525,665 - 10652 mRNA_2284 0.15 +0.2
525,689 + 10652 mRNA_2284 0.19 +0.0
525,691 + 10652 mRNA_2284 0.19 -2.1
525,713 - 10652 mRNA_2284 0.23 -2.0
525,717 + 10652 mRNA_2284 0.24 +1.0
525,719 + 10652 mRNA_2284 0.25 +0.5
525,722 + 10652 mRNA_2284 0.25 -3.7
525,727 + 10652 mRNA_2284 0.26 +0.2
525,732 + 10652 mRNA_2284 0.27 +0.6
525,747 + 10652 mRNA_2284 0.30 -0.8
525,751 + 10652 mRNA_2284 0.30 +1.3
525,753 - 10652 mRNA_2284 0.31 +0.6
525,754 - 10652 mRNA_2284 0.31 +0.7
525,766 - 10652 mRNA_2284 0.33 -1.0
525,767 + 10652 mRNA_2284 0.33 +0.1
525,773 + 10652 mRNA_2284 0.34 +1.6
525,797 + 10652 mRNA_2284 0.39 -0.9
525,806 - 10652 mRNA_2284 0.40 +0.4
525,833 + 10652 mRNA_2284 0.45 +0.7
525,833 + 10652 mRNA_2284 0.45 -0.7
525,847 + 10652 mRNA_2284 0.48 +1.0
525,855 + 10652 mRNA_2284 0.49 +1.9
525,857 - 10652 mRNA_2284 0.50 -1.9
525,862 + 10652 mRNA_2284 0.51 +0.5
525,864 + 10652 mRNA_2284 0.51 -0.4
525,871 - 10652 mRNA_2284 0.52 +0.2
525,876 + 10652 mRNA_2284 0.53 +0.6
525,878 - 10652 mRNA_2284 0.54 +1.5
525,971 - 10652 mRNA_2284 0.70 -0.6
525,977 - 10652 mRNA_2284 0.72 -0.7
525,987 + 10652 mRNA_2284 0.73 +0.5

Or see this region's nucleotide sequence