Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2284

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10651 and 10652 are separated by 591 nucleotides10652 and 10653 are separated by 528 nucleotides mRNA_2283: 10651 - KOG1674 Cyclin, at 524,604 to 524,992 10651 mRNA_2284: 10652 - Hypothetical Protein, at 525,584 to 526,132 10652 mRNA_2285: 10653 - SUPERFAMILY--SSF53300, at 526,661 to 528,036 10653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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524,722 + 10651 mRNA_2283 0.30 +0.1
524,847 + 10651 mRNA_2283 0.62 +1.4
524,853 + 10651 mRNA_2283 0.64 -0.4
525,090 + +0.3
525,140 + +0.4
525,271 - +0.9
525,410 + +0.5
525,575 + -0.3
525,576 - -1.9
525,589 + -0.1
525,652 - 10652 mRNA_2284 0.12 +0.6
525,665 - 10652 mRNA_2284 0.15 +0.2
525,689 + 10652 mRNA_2284 0.19 +0.0
525,691 + 10652 mRNA_2284 0.19 -2.1
525,713 - 10652 mRNA_2284 0.23 -2.0
525,717 + 10652 mRNA_2284 0.24 +1.0
525,719 + 10652 mRNA_2284 0.25 +0.5
525,722 + 10652 mRNA_2284 0.25 -3.7
525,727 + 10652 mRNA_2284 0.26 +0.2
525,732 + 10652 mRNA_2284 0.27 +0.6
525,747 + 10652 mRNA_2284 0.30 -0.8
525,751 + 10652 mRNA_2284 0.30 +1.3
525,753 - 10652 mRNA_2284 0.31 +0.6
525,754 - 10652 mRNA_2284 0.31 +0.7
525,766 - 10652 mRNA_2284 0.33 -1.0
525,767 + 10652 mRNA_2284 0.33 +0.1
525,773 + 10652 mRNA_2284 0.34 +1.6
525,797 + 10652 mRNA_2284 0.39 -0.9
525,806 - 10652 mRNA_2284 0.40 +0.4
525,833 + 10652 mRNA_2284 0.45 +0.7
525,833 + 10652 mRNA_2284 0.45 -0.7
525,847 + 10652 mRNA_2284 0.48 +1.0
525,855 + 10652 mRNA_2284 0.49 +1.9
525,857 - 10652 mRNA_2284 0.50 -1.9
525,862 + 10652 mRNA_2284 0.51 +0.5
525,864 + 10652 mRNA_2284 0.51 -0.4
525,871 - 10652 mRNA_2284 0.52 +0.2
525,876 + 10652 mRNA_2284 0.53 +0.6
525,878 - 10652 mRNA_2284 0.54 +1.5
525,971 - 10652 mRNA_2284 0.70 -0.6
525,977 - 10652 mRNA_2284 0.72 -0.7
525,987 + 10652 mRNA_2284 0.73 +0.5
525,996 - 10652 mRNA_2284 0.75 +0.8
526,002 - 10652 mRNA_2284 0.76 +1.0
526,011 - 10652 mRNA_2284 0.78 +0.5
526,020 + 10652 mRNA_2284 0.79 +0.4
526,025 - 10652 mRNA_2284 0.80 +0.2
526,027 - 10652 mRNA_2284 0.81 +1.4
526,040 + 10652 mRNA_2284 0.83 +0.7
526,043 - 10652 mRNA_2284 0.84 +0.3
526,045 + 10652 mRNA_2284 0.84 -1.8
526,047 + 10652 mRNA_2284 0.84 -1.5
526,052 + 10652 mRNA_2284 0.85 -0.3
526,053 + 10652 mRNA_2284 0.85 -0.0
526,056 + 10652 mRNA_2284 0.86 -0.5
526,060 + 10652 mRNA_2284 0.87 +0.6
526,060 + 10652 mRNA_2284 0.87 -0.9
526,064 + 10652 mRNA_2284 0.87 +0.4
526,065 - 10652 mRNA_2284 0.88 -0.3
526,066 + 10652 mRNA_2284 0.88 -1.0
526,068 + 10652 mRNA_2284 0.88 +1.1
526,070 + 10652 mRNA_2284 0.89 +0.0
526,078 - -0.7
526,082 + +0.6
526,082 - -0.8
526,085 - +0.5
526,087 + +0.6
526,106 + +0.6
526,106 + +0.5
526,116 + +0.1
526,116 - +0.7
526,117 - -1.3
526,125 - +0.2
526,129 + -0.2
526,132 - -0.0
526,138 - +1.5
526,149 + +0.2
526,164 + +0.6
526,174 - +1.1
526,181 - -1.2
526,184 + -0.9
526,186 + +0.6
526,192 + +2.6
526,193 + -0.7
526,195 - +1.6
526,198 + +0.7
526,199 - +0.5
526,204 - -1.1
526,210 + -0.2
526,214 - -0.0
526,234 + +0.2
526,254 - +1.2
526,275 - -1.1
526,279 - -0.2
526,289 - -0.2
526,296 + -0.3
526,297 - +0.4
526,298 + -0.1
526,303 + +0.8
526,307 + +2.2
526,309 - -1.6
526,324 - +0.6
526,331 + -0.9
526,333 + -1.2
526,334 + -1.4
526,344 - +0.3
526,345 - +0.7
526,453 + -0.5
526,460 + +0.1
526,500 + +0.1
526,526 + +0.8
526,655 - +1.3
526,672 + +0.2
526,679 + -0.2
526,804 + 10653 mRNA_2285 0.10 -0.2
526,925 + 10653 mRNA_2285 0.19 +0.2

Or see this region's nucleotide sequence