Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2293

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10660 and 10661 are separated by 161 nucleotides10661 and 10662 are separated by 162 nucleotides mRNA_2292: 10660 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 543,301 to 545,980 10660 mRNA_2293: 10661 - BLAST splicing arginine serine-rich 12 [Moesziomyces an..., at 546,142 to 547,358 10661 mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547,521 to 548,816 10662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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546,205 + -1.4
546,286 + 10661 mRNA_2293 0.12 -1.6
546,565 + 10661 mRNA_2293 0.35 -0.5
546,599 - 10661 mRNA_2293 0.38 -0.2
546,853 + 10661 mRNA_2293 0.58 +0.6
547,303 + -0.3
547,304 - -0.0
547,307 + +0.3
547,309 + +1.9
547,325 + -0.4
547,453 - +0.9
547,599 + +0.0
547,602 + +0.2
547,874 + 10662 mRNA_2294 0.27 -0.2
547,891 - 10662 mRNA_2294 0.29 +0.4
547,898 + 10662 mRNA_2294 0.29 +1.9
547,913 - 10662 mRNA_2294 0.30 +0.6
548,063 + 10662 mRNA_2294 0.42 +0.4
548,318 - 10662 mRNA_2294 0.61 +0.8

Or see this region's nucleotide sequence