Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2297

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10664 and 10665 are separated by 689 nucleotides10665 and 10666 are separated by 208 nucleotides mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549,665 to 551,990 10664 mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552,680 to 555,232 10665 mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555,441 to 556,485 10666

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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552,154 + +0.1
552,155 + +0.1
552,288 - -0.7
552,292 + +1.3
552,328 + -2.1
552,430 - +0.8
552,442 - -0.7
552,444 - +0.4
552,449 - -0.6
552,450 - +0.8
552,460 + +0.5
552,462 - -0.2
552,467 + +0.7
552,568 + -0.3
552,590 + +1.4
552,590 + +0.5
552,599 - +0.6
552,609 + +0.4
552,654 + -0.2
552,733 + +0.2
552,774 + -0.5
552,893 - +0.6
553,042 - 10665 mRNA_2297 0.14 -0.9
553,197 - 10665 mRNA_2297 0.20 -0.5
553,312 - 10665 mRNA_2297 0.25 -0.2
553,351 - 10665 mRNA_2297 0.26 -0.4
553,475 - 10665 mRNA_2297 0.31 +0.4
553,953 + 10665 mRNA_2297 0.50 +1.1
554,045 - 10665 mRNA_2297 0.53 -1.4
554,322 + 10665 mRNA_2297 0.64 -2.2
555,638 + 10666 mRNA_2298 0.19 -2.1
555,642 - 10666 mRNA_2298 0.19 +1.4
555,653 - 10666 mRNA_2298 0.20 +0.0
555,653 + 10666 mRNA_2298 0.20 -0.0

Or see this region's nucleotide sequence