Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2357

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10725 and 10726 are separated by 0 nucleotides10726 and 10727 are separated by 213 nucleotides mRNA_2357: 10725 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 698,588 to 700,327 10725 mRNA_2358: 10726 - Hypothetical Protein, at 700,328 to 700,780 10726 mRNA_2359: 10727 - K02927 RP-L40e, RPL40 large subunit ribosomal protein L40e, at 700,994 to 701,674 10727

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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697,688 - -0.6
697,705 + +1.7
697,851 - -0.8
697,956 + +0.7
697,970 - +0.2
697,974 + -1.7
698,287 + -0.7
698,589 - -0.5
698,730 - -0.0
698,863 - 10725 mRNA_2357 0.16 +1.7
699,299 - 10725 mRNA_2357 0.41 +0.3
699,475 + 10725 mRNA_2357 0.51 +1.9
699,660 - 10725 mRNA_2357 0.62 +0.4
700,674 - 10726 mRNA_2358 0.76 +1.3

Or see this region's nucleotide sequence