Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2367

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10734 and 10735 are separated by 677 nucleotides10735 and 10736 are separated by 634 nucleotides mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719,929 to 722,612 10734 mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723,290 to 728,071 10735 mRNA_2368: 10736 - Hypothetical Protein, at 728,706 to 728,915 10736

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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722,410 - +1.4
722,537 - +0.1
722,564 + -0.2
722,898 + -0.2
723,004 - +1.4
723,009 + +0.7
723,030 - +0.5
723,039 - -1.1
727,884 - -1.4
728,032 - -1.3
728,175 + -1.4
728,178 - +0.3
728,187 + +0.7
728,189 - -0.7
728,194 - +0.0
728,197 + -0.3
728,197 - +1.3
728,205 - +0.1
728,208 + -0.2
728,212 + -0.1
728,334 - +0.7
728,344 - +1.1
728,368 + -0.2
728,477 - +0.9
728,486 - +1.2
728,525 - +1.1
728,621 - -2.5
728,757 + 10736 mRNA_2368 0.24 +0.2

Or see this region's nucleotide sequence