Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2423

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10790 and 10791 are separated by 222 nucleotides10791 and 10792 are separated by 581 nucleotides mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84,636 to 85,865 10790 mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86,088 to 89,055 10791 mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89,637 to 90,963 10792

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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85,177 - 10790 mRNA_2422 0.44 +0.9
85,193 + 10790 mRNA_2422 0.45 +0.2
85,195 - 10790 mRNA_2422 0.45 -1.8
85,601 - 10790 mRNA_2422 0.78 +0.6
85,909 - +0.7
86,028 + +0.2
86,072 - +0.1
86,164 - +0.2
86,236 - +2.8
86,239 - -1.2
86,338 - +0.9
86,378 + -0.5
86,519 - 10791 mRNA_2423 0.15 +0.7
86,622 + 10791 mRNA_2423 0.18 +0.1
86,657 + 10791 mRNA_2423 0.19 +0.1
86,751 - 10791 mRNA_2423 0.22 -0.6
86,885 - 10791 mRNA_2423 0.27 +0.5
86,940 + 10791 mRNA_2423 0.29 +0.8
87,011 + 10791 mRNA_2423 0.31 -1.3
87,232 - 10791 mRNA_2423 0.39 -0.3
87,253 - 10791 mRNA_2423 0.39 +0.4
87,253 - 10791 mRNA_2423 0.39 -0.5
87,259 + 10791 mRNA_2423 0.39 -0.8
87,401 + 10791 mRNA_2423 0.44 -0.6
87,502 - 10791 mRNA_2423 0.48 +0.5
87,535 + 10791 mRNA_2423 0.49 -1.2
87,536 + 10791 mRNA_2423 0.49 +0.9
87,918 + 10791 mRNA_2423 0.62 -0.5
87,937 - 10791 mRNA_2423 0.62 -0.6
87,998 - 10791 mRNA_2423 0.64 -0.6
88,071 + 10791 mRNA_2423 0.67 +0.3
88,238 + 10791 mRNA_2423 0.72 -1.2
88,415 - 10791 mRNA_2423 0.78 -1.8
88,681 - 10791 mRNA_2423 0.87 +0.3
88,830 + +0.7
88,997 - +0.4
89,118 - -0.2
89,132 - -1.8
89,162 - +0.1
89,172 + +0.4
89,173 + -0.3
89,183 + -0.7
89,429 + -1.5
89,593 + -1.0
89,614 - -0.6
90,049 - 10792 mRNA_2424 0.31 -1.1

Or see this region's nucleotide sequence