Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2471

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10839 and 10840 are separated by 513 nucleotides mRNA_2471: 10839 - K13104 ZNF830, CCDC16 zinc finger protein 830, at 227,199 to 228,171 10839 mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228,685 to 229,666 10840

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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226,723 - +0.5
226,726 + -0.3
226,734 + -0.4
226,737 - +0.9
226,738 - -0.2
226,739 + -1.0
226,749 + +0.9
226,774 - -0.4
226,896 + -0.4
226,916 + +1.4
227,052 + -1.6
227,497 - 10839 mRNA_2471 0.31 -0.7
227,655 - 10839 mRNA_2471 0.47 -0.2
228,073 + 10839 mRNA_2471 0.90 +1.5
228,073 - 10839 mRNA_2471 0.90 -0.4
228,088 - +0.1
228,170 - +1.3
228,217 - -0.6
228,218 + -1.3
228,335 - +0.9
228,346 - +1.2
228,348 - +0.7
228,360 + +1.8
228,367 + -1.1
228,372 + -1.2
228,464 - +0.1
228,466 + +0.1
228,523 - +0.1
228,644 - -0.6
228,757 - -0.1

Or see this region's nucleotide sequence