Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2478

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10845 and 10846 are separated by 380 nucleotides10846 and 10847 are separated by 690 nucleotides mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242,038 to 243,139 10845 mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243,520 to 246,165 10846 mRNA_2479: 10847 - Hypothetical Protein, at 246,856 to 249,133 10847

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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243,285 + -0.5
243,304 - +0.4
243,308 + -0.8
243,398 - +0.5
243,434 - -0.2
243,438 + +0.9
243,458 + -0.0
243,458 + +0.3
243,466 + +2.0
243,600 - +0.8
243,746 + +1.7
244,266 - 10846 mRNA_2478 0.28 +1.7
244,345 - 10846 mRNA_2478 0.31 +0.3
244,498 - 10846 mRNA_2478 0.37 +2.0
245,062 + 10846 mRNA_2478 0.58 +0.7
245,087 + 10846 mRNA_2478 0.59 -0.3
245,165 - 10846 mRNA_2478 0.62 -0.7
245,357 - 10846 mRNA_2478 0.69 +0.2
245,507 - 10846 mRNA_2478 0.75 +0.2
245,816 - 10846 mRNA_2478 0.87 +1.3
245,930 + +2.3
245,932 - +0.8
245,940 + +0.8
245,944 - +1.1
246,209 + -1.2
246,238 - +0.6
246,247 - +0.1
246,251 + +1.4
246,253 - -1.0
246,253 + -0.2
246,383 + +0.1
246,391 - +0.3
246,394 + -0.1
246,525 - +1.0
246,533 - -1.5
246,537 - +0.8
246,856 - +0.7
246,862 - -0.8
247,101 - 10847 mRNA_2479 0.11 -0.2

Or see this region's nucleotide sequence