Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2525

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10893 and 10894 are separated by 601 nucleotides mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354,865 to 358,254 10893 mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358,856 to 360,952 10894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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353,869 - +1.3
354,353 - -0.0
354,577 - +0.3
354,754 + -0.6
354,763 + -0.8
354,780 + -2.9
354,931 + -0.8
355,232 + 10893 mRNA_2525 0.11 +0.9
355,421 - 10893 mRNA_2525 0.16 -0.9
355,931 - 10893 mRNA_2525 0.31 -2.1
355,932 + 10893 mRNA_2525 0.31 +0.7
355,963 + 10893 mRNA_2525 0.32 -0.0
356,058 - 10893 mRNA_2525 0.35 +0.2
356,223 - 10893 mRNA_2525 0.40 +0.2
356,225 - 10893 mRNA_2525 0.40 +1.7
356,431 - 10893 mRNA_2525 0.46 +1.5
356,528 + 10893 mRNA_2525 0.49 -0.3
356,534 - 10893 mRNA_2525 0.49 +1.3
356,561 + 10893 mRNA_2525 0.50 -1.3
356,836 - 10893 mRNA_2525 0.58 +1.1
357,002 - 10893 mRNA_2525 0.63 -0.4
357,034 - 10893 mRNA_2525 0.64 -1.5
357,046 - 10893 mRNA_2525 0.64 -0.3
357,263 - 10893 mRNA_2525 0.71 +1.5
357,272 + 10893 mRNA_2525 0.71 +0.8
357,678 - 10893 mRNA_2525 0.83 -0.0
357,737 + 10893 mRNA_2525 0.85 +0.3
357,852 - 10893 mRNA_2525 0.88 -1.0
358,009 - +0.2
358,013 - +0.4
358,021 - -1.0
358,046 + +0.3
358,144 - -1.2
358,213 + -0.2
358,307 - -0.3
358,336 + -0.3
358,384 + +0.1
358,387 - +0.2
358,447 + +0.2
358,462 - +0.2
358,530 - -0.3
358,577 + +0.4
358,593 + -0.7
358,599 - -0.3
358,613 - -0.6
358,653 - -0.6
358,680 + +2.2
358,692 - +0.8
358,766 - +0.4
358,994 + -0.1
359,140 - 10894 mRNA_2526 0.14 +1.2
359,216 + 10894 mRNA_2526 0.17 +0.4

Or see this region's nucleotide sequence