Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2547

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10914 and 10915 are separated by 249 nucleotides10915 and 10916 are separated by 206 nucleotides mRNA_2546: 10914 - Hypothetical Protein, at 413,634 to 416,302 10914 mRNA_2547: 10915 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 416,552 to 418,992 10915 mRNA_2548: 10916 - KOG1943 Beta-tubulin folding cofactor D, at 419,199 to 423,600 10916

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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415,856 - 10914 mRNA_2546 0.83 -1.1
415,950 - 10914 mRNA_2546 0.87 -0.5
416,094 - +0.0
416,190 + +0.2
417,443 + 10915 mRNA_2547 0.37 +0.5
417,811 - 10915 mRNA_2547 0.52 +0.3
418,270 + 10915 mRNA_2547 0.70 -1.0
418,346 - 10915 mRNA_2547 0.73 -1.6
418,463 - 10915 mRNA_2547 0.78 +0.6
418,534 + 10915 mRNA_2547 0.81 -1.5
418,537 - 10915 mRNA_2547 0.81 +0.5
418,550 - 10915 mRNA_2547 0.82 +1.4
418,628 - 10915 mRNA_2547 0.85 -0.2
418,669 - 10915 mRNA_2547 0.87 +0.5
418,693 + 10915 mRNA_2547 0.88 +0.4
418,995 - -0.5
419,022 - -0.4
419,147 - +0.2
419,151 - -0.9
419,157 + +0.9
419,165 + -0.1
419,336 + -2.9

Or see this region's nucleotide sequence