Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2588

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10955 and 10956 are separated by 291 nucleotides10956 and 10957 are separated by 949 nucleotides mRNA_2587: 10955 - K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1, at 543,076 to 544,917 10955 mRNA_2588: 10956 - K03246 EIF3I translation initiation factor 3 subunit I, at 545,209 to 547,043 10956 mRNA_2589: 10957 - Hypothetical Protein, at 547,993 to 548,642 10957

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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544,463 - 10955 mRNA_2587 0.75 -4.6
544,767 + -1.4
544,771 - -1.8
545,191 + -1.3
547,096 + +0.5
547,235 + -0.7
547,249 + -0.4
547,269 + -0.4
547,400 - +0.2
547,692 + -0.7
547,762 - +0.9
547,972 - +1.4

Or see this region's nucleotide sequence