Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2604

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10971 and 10972 are separated by 29 nucleotides10972 and 10973 are separated by 124 nucleotides mRNA_2603: 10971 - Hypothetical Protein, at 573,332 to 575,202 10971 mRNA_2604: 10972 - BLAST Esterase, SGNH hydrolase-type domain protein [Rho..., at 575,232 to 576,935 10972 mRNA_2605: 10973 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 577,060 to 580,725 10973

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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574,289 + 10971 mRNA_2603 0.51 +1.1
574,457 - 10971 mRNA_2603 0.60 -0.7
574,615 - 10971 mRNA_2603 0.69 +0.3
574,630 - 10971 mRNA_2603 0.69 -0.1
574,960 + 10971 mRNA_2603 0.87 -1.0
575,099 + +0.1
575,269 + -0.1
575,325 - -0.0
575,337 + -0.0
575,673 + 10972 mRNA_2604 0.26 +0.4
575,797 - 10972 mRNA_2604 0.33 -0.4
575,817 - 10972 mRNA_2604 0.34 +1.0
575,817 + 10972 mRNA_2604 0.34 -1.5
575,825 + 10972 mRNA_2604 0.35 +0.5
575,947 - 10972 mRNA_2604 0.42 +0.1
575,973 - 10972 mRNA_2604 0.43 +0.3
575,980 + 10972 mRNA_2604 0.44 -0.2
576,119 - 10972 mRNA_2604 0.52 +0.7
576,370 + 10972 mRNA_2604 0.67 +2.1
576,557 + 10972 mRNA_2604 0.78 -0.4
576,836 + -0.7
576,973 + -1.1
576,974 - -1.0
576,975 + +0.4
576,978 - +0.4
576,995 + -0.3
576,996 + -0.8
576,999 + +1.4
576,999 + -0.0
577,002 - -1.3
577,003 + -0.7
577,007 + -0.1
577,008 + +0.6
577,013 - +0.2
577,022 + +0.0
577,144 + +1.1
577,147 - +0.6
577,148 - -0.1
577,151 - +1.6
577,152 + +0.2
577,156 - +0.0
577,159 + +0.2
577,288 - -0.1
577,301 + +1.2
577,305 + -1.0
577,322 + -1.6
577,438 - 10973 mRNA_2605 0.10 -1.7
577,468 - 10973 mRNA_2605 0.11 +0.9
577,589 - 10973 mRNA_2605 0.14 +0.9
577,589 - 10973 mRNA_2605 0.14 +0.2
577,598 + 10973 mRNA_2605 0.15 +0.6
577,628 + 10973 mRNA_2605 0.15 +1.0
577,693 - 10973 mRNA_2605 0.17 +0.9
577,718 + 10973 mRNA_2605 0.18 -0.1
577,726 + 10973 mRNA_2605 0.18 -0.9

Or see this region's nucleotide sequence