Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2652

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11019 and 11020 are separated by 241 nucleotides11020 and 11021 are separated by 559 nucleotides mRNA_2651: 11019 - Hypothetical Protein, at 680,407 to 680,751 11019 mRNA_2652: 11020 - Hypothetical Protein, at 680,993 to 681,631 11020 mRNA_2653: 11021 - K15040 VDAC2 voltage-dependent anion channel protein 2, at 682,191 to 683,966 11021

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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680,298 - +1.1
680,371 - +0.8
680,375 - -0.1
680,473 - 11019 mRNA_2651 0.19 +0.0
680,507 - 11019 mRNA_2651 0.29 -0.2
680,610 + 11019 mRNA_2651 0.59 +1.5
680,776 + +1.0
680,782 + -0.3
681,495 + 11020 mRNA_2652 0.79 +1.7
681,673 + -0.3
681,685 - -0.3
681,694 + -0.4
681,725 - +1.1
681,769 + +0.9
681,786 + +0.2
681,801 - -1.4
681,866 + +1.1
681,935 - -0.4
681,952 + -0.3
681,966 - -1.3

Or see this region's nucleotide sequence