Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2654

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11022 and 11023 are separated by 403 nucleotides mRNA_2654: 11022 - K00864 glpK, GK glycerol kinase, at 685,161 to 688,307 11022 mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606 11023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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684,181 - -0.9
684,182 - -1.6
684,312 - -1.0
684,328 + -0.8
684,329 - +1.0
684,475 - -0.2
684,480 + +0.8
684,588 + -0.3
684,596 - +0.9
684,774 - -0.9
684,903 + +1.8
684,903 - +0.3
684,906 + -0.9
684,907 + -1.8
684,922 + -0.3
684,923 - +0.7
684,935 + -0.2
685,038 + +0.1
685,038 - -1.4
685,038 - -1.7
685,039 + +2.4
685,045 - -0.9
685,048 + +0.0
685,063 - -2.3
685,068 + -0.4
685,068 + +0.2
685,068 + +0.0
685,069 + +0.0
685,072 + -1.8
685,081 + -0.3
685,081 + +0.3
685,097 + +1.2
685,097 - -0.5
685,103 + +0.1
685,107 - -0.4
685,111 + -0.3
685,120 - +0.2
685,128 - +0.7
685,203 - +0.6
685,274 + -0.6
685,274 + -1.8
685,277 + +0.9
685,289 + -1.0
685,298 + -0.4
685,385 - -0.1
685,431 - -0.9
685,433 + +0.7
685,510 - 11022 mRNA_2654 0.11 -1.3
685,562 + 11022 mRNA_2654 0.13 -0.5
685,710 - 11022 mRNA_2654 0.17 -0.5
686,277 - 11022 mRNA_2654 0.35 +0.0
686,288 - 11022 mRNA_2654 0.36 +1.0
686,336 - 11022 mRNA_2654 0.37 -0.1
686,606 + 11022 mRNA_2654 0.46 +0.7
686,711 - 11022 mRNA_2654 0.49 -1.6
686,727 - 11022 mRNA_2654 0.50 -3.0
686,736 - 11022 mRNA_2654 0.50 +0.7
687,027 + 11022 mRNA_2654 0.59 -0.1
687,180 + 11022 mRNA_2654 0.64 -1.1
688,160 + +0.8
688,230 - -1.3
688,323 + +0.8
688,374 - +0.5
688,410 - +0.5
688,573 - -0.5
688,574 - -0.6
688,577 - +0.3
688,582 + -1.0
688,593 + -0.2
688,594 - +0.3
688,597 - +0.2
688,610 + -0.5
688,627 + +0.2
688,645 + +0.1
688,645 + +1.3
688,662 - +1.6
688,687 - +0.8
688,776 - +0.9
688,781 + +0.2
689,121 + 11023 mRNA_2655 0.22 -0.7

Or see this region's nucleotide sequence