Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2656

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11023 and 11024 are separated by 147 nucleotides11024 and 11025 are separated by 483 nucleotides mRNA_2655: 11023 - HMMPfam-Protein of unknown function (DUF1479)-PF07350,SUPERFAMILY--SSF51197, at 688,711 to 690,606 11023 mRNA_2656: 11024 - KOG3417 Ras1 guanine nucleotide exchange factor, at 690,754 to 695,161 11024 mRNA_2657: 11025 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 695,645 to 696,729 11025

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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689,924 - 11023 mRNA_2655 0.64 -0.0
690,135 - 11023 mRNA_2655 0.75 +3.3
690,446 - +2.0
690,581 + -0.0
690,890 + +0.1
691,054 - +2.7
691,308 + 11024 mRNA_2656 0.13 +1.4
691,348 + 11024 mRNA_2656 0.13 +2.1
691,474 + 11024 mRNA_2656 0.16 +1.8
691,511 + 11024 mRNA_2656 0.17 +0.4
691,599 - 11024 mRNA_2656 0.19 +0.5
691,610 - 11024 mRNA_2656 0.19 +0.6
691,760 + 11024 mRNA_2656 0.23 +1.8
691,785 + 11024 mRNA_2656 0.23 -0.0
691,873 - 11024 mRNA_2656 0.25 +2.0
691,901 - 11024 mRNA_2656 0.26 +1.8
692,059 + 11024 mRNA_2656 0.30 +2.8
692,392 - 11024 mRNA_2656 0.37 +0.3
692,486 + 11024 mRNA_2656 0.39 +2.4
692,546 + 11024 mRNA_2656 0.41 +0.8
692,590 + 11024 mRNA_2656 0.42 +0.9
692,701 - 11024 mRNA_2656 0.44 +1.1
692,721 - 11024 mRNA_2656 0.45 -0.3
692,822 - 11024 mRNA_2656 0.47 +1.0
693,378 + 11024 mRNA_2656 0.60 -0.2
693,401 + 11024 mRNA_2656 0.60 +1.4
693,748 - 11024 mRNA_2656 0.68 +0.0
693,749 + 11024 mRNA_2656 0.68 +1.3
693,867 + 11024 mRNA_2656 0.71 -0.7
693,885 + 11024 mRNA_2656 0.71 +1.0
694,341 + 11024 mRNA_2656 0.81 -0.1
694,558 + 11024 mRNA_2656 0.86 +0.9
694,873 - +1.7
695,134 - -1.0
695,154 - +1.5
695,157 - +1.6
695,157 + +2.1
695,287 - -0.2
695,289 + +0.4
695,300 - +1.1
695,315 - +0.9
695,429 - +1.4
695,465 - -0.4
695,481 - +1.1
695,491 - +1.7
695,495 + -0.2
695,496 - -1.0
695,498 + +0.3
695,503 + +0.8
695,598 - +0.5
695,601 - -1.7
695,603 - +2.1

Or see this region's nucleotide sequence