Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2660

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11027 and 11028 are separated by 202 nucleotides11028 and 11029 are separated by 98 nucleotides mRNA_2659: 11027 - Hypothetical Protein, at 699,650 to 700,523 11027 mRNA_2660: 11028 - Hypothetical Protein, at 700,726 to 702,526 11028 mRNA_2661: 11029 - Interpro GDP-fucose protein O-fucosyltransferase, at 702,625 to 704,593 11029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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699,737 + -0.4
699,747 - 11027 mRNA_2659 0.11 -0.8
699,831 - 11027 mRNA_2659 0.21 +0.1
699,931 + 11027 mRNA_2659 0.32 +0.6
699,933 - 11027 mRNA_2659 0.32 -1.0
699,973 + 11027 mRNA_2659 0.37 -0.1
700,124 - 11027 mRNA_2659 0.54 -0.8
700,125 + 11027 mRNA_2659 0.54 -4.6
700,259 + 11027 mRNA_2659 0.70 -1.9
700,399 - 11027 mRNA_2659 0.86 +0.9
700,410 - 11027 mRNA_2659 0.87 +3.3
700,552 + +0.9
700,554 - +0.1
700,569 + +2.0
700,572 - +1.9
700,694 - +0.4
700,710 - +0.9
700,714 - +0.2
700,827 - +0.2
700,864 + -0.1
700,880 - -2.7
700,890 + -1.2
701,605 + 11028 mRNA_2660 0.49 +1.1
702,007 + 11028 mRNA_2660 0.71 +0.6
702,354 - -1.1
702,462 + -0.2
702,523 - +0.1
702,589 + -0.8
703,392 - 11029 mRNA_2661 0.39 +0.6

Or see this region's nucleotide sequence