Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2662

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11030 and 11031 are separated by 525 nucleotides mRNA_2662: 11030 - Interpro Bacterial protein of unknown function (HtrL_YibB), at 705,643 to 707,120 11030 mRNA_2663: 11031 - Hypothetical Protein, at 707,646 to 708,293 11031

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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704,831 + +0.7
704,953 - +2.4
704,958 + -0.1
704,964 - -0.3
704,973 + -0.7
704,979 + -0.7
704,995 + -0.1
705,012 + +1.2
705,108 - -0.3
705,120 - +0.2
705,120 - +0.2
705,122 - -2.0
705,127 + +0.2
705,132 - +0.3
705,134 - -0.6
705,137 - +0.8
705,140 - +0.8
705,140 - -0.8
705,142 + +0.1
705,149 - +0.1
705,149 - -0.8
705,151 + -0.7
705,153 - +0.2
705,172 + +0.4
705,182 + +0.0
705,184 - +1.7
705,191 + +0.1
705,203 - +0.5
705,216 + -0.7
705,216 + -0.2
705,224 - +1.9
705,226 + -0.4
705,227 + -3.4
705,235 - -0.0
705,238 - -0.6
705,240 + -2.1
705,243 + -0.4
705,244 + +1.0
705,249 + +0.5
705,252 + +0.8
705,254 - -0.1
705,257 + -0.7
705,315 + +1.4
705,342 + -0.6
705,347 - -0.6
705,354 + +1.4
705,354 + -0.2
705,363 - -0.6
705,373 - -0.0
705,379 - -1.7
705,380 - +0.1
705,386 - -0.0
705,388 - -0.7
705,394 + +0.6
705,402 - -0.6
705,436 + +0.2
705,439 + -0.6
705,441 - +0.3
705,448 + +1.3
705,455 - +1.4
705,464 + +0.2
705,489 - -0.5
705,499 - +1.8
705,508 + -0.1
705,512 - +0.4
705,513 - -0.5
705,515 - +0.2
705,516 - +2.2
705,520 - +0.9
705,524 + +0.9
705,530 + +0.1
705,530 + +0.1
705,531 - -0.1
705,532 + +1.3
705,533 + +0.2
705,534 + -0.2
705,536 + -0.6
705,540 - +1.3
705,541 - +0.7
705,543 - +1.3
705,545 - +2.4
705,546 - +0.6
705,548 + +0.4
705,551 - +0.8
705,552 + +0.4
705,553 + +0.6
705,556 - +0.6
705,561 + -0.3
705,562 + -1.5
705,563 - -0.4
705,564 + -0.0
705,565 + -0.2
705,569 + +0.1
705,569 + +0.0
705,576 - -1.3
705,582 - -0.3
705,588 - -1.1
705,592 + -1.8
705,597 + +0.0
705,675 - -1.0
705,697 + +0.5
705,726 + +0.2
705,728 - -1.2
705,728 + -0.3
705,737 - +0.9
705,755 + +1.7
705,845 + 11030 mRNA_2662 0.14 -0.8
705,868 + 11030 mRNA_2662 0.15 -0.8
705,892 - 11030 mRNA_2662 0.17 +0.3
705,917 + 11030 mRNA_2662 0.19 +0.0
706,006 + 11030 mRNA_2662 0.25 +0.2
706,114 - 11030 mRNA_2662 0.32 +1.4
706,917 + 11030 mRNA_2662 0.86 -0.5
707,047 - +0.3
707,061 - -0.0
707,184 + -1.1
707,203 - +0.9
707,206 - -1.4
707,233 - -0.3
707,311 - +0.4
707,321 + +0.1
707,331 - +1.4
707,346 + -0.2
707,382 + -0.5
707,590 - +0.5
707,657 + -1.3

Or see this region's nucleotide sequence