Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2671

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11038 and 11039 are separated by 952 nucleotides11039 and 11040 are separated by 857 nucleotides mRNA_2670: 11038 - SUPERFAMILY--SSF52058, at 724,183 to 725,340 11038 mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726,293 to 729,723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730,581 to 733,538 11040

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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725,372 + -1.4
725,398 + -0.4
725,400 + +0.8
725,457 - -0.7
725,590 + -1.6
725,602 + -0.6
725,745 - -0.1
725,753 + -0.3
725,765 - -1.4
725,773 + +1.3
725,774 - +1.5
725,783 + +0.7
725,800 + -0.8
725,807 + -0.9
725,814 - -0.1
725,843 - -0.6
725,879 + +0.8
725,879 + +0.4
726,006 + -0.4
726,029 + +0.4
726,045 + -0.1
726,203 + +0.1
726,748 - 11039 mRNA_2671 0.13 +1.1
727,041 + 11039 mRNA_2671 0.22 -4.1
727,099 + 11039 mRNA_2671 0.23 -2.0
727,186 - 11039 mRNA_2671 0.26 -2.3
727,484 + 11039 mRNA_2671 0.35 -1.2
727,816 - 11039 mRNA_2671 0.44 -0.1
727,933 + 11039 mRNA_2671 0.48 -2.1
728,039 - 11039 mRNA_2671 0.51 -0.6
728,053 - 11039 mRNA_2671 0.51 -0.8
728,078 + 11039 mRNA_2671 0.52 +1.0
728,416 + 11039 mRNA_2671 0.62 -1.8
728,511 - 11039 mRNA_2671 0.65 -1.1
728,802 - 11039 mRNA_2671 0.73 -0.6
729,527 + -0.6
729,665 + -0.8
729,703 + -1.6
729,785 - -0.1
729,799 + +1.0
729,956 - +0.1
729,959 - +0.1
729,968 - -1.3
729,969 + -0.4
729,970 + -0.5
729,999 - -1.9
730,001 - -0.7
730,013 + +1.7
730,013 + -0.9
730,087 - -0.5
730,112 - +0.5
730,119 + +2.2
730,122 - -0.1
730,144 - -0.4
730,146 - +0.1
730,146 - -0.1
730,147 + -0.0
730,152 - +2.3
730,152 + -0.9
730,167 + -0.5
730,172 - +1.2
730,185 + +0.2
730,213 + +0.2
730,213 + -0.5
730,287 + +1.5
730,300 + -0.2
730,309 + -0.9
730,323 + +0.8
730,330 - +1.4
730,340 + +0.4
730,470 - -1.3
730,472 - +1.2
730,473 - +0.5
730,476 - +0.1
730,484 - +0.3
730,497 + +0.1
730,504 + -2.9
730,505 + -0.6
730,507 - +0.6
730,618 - +0.4

Or see this region's nucleotide sequence