Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2674

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11041 and 11042 are separated by 454 nucleotides mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734,339 to 738,341 11041 mRNA_2674: 11042 - Hypothetical Protein, at 738,796 to 742,591 11042

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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737,976 + +0.9
738,074 + -0.3
738,088 + +0.8
738,155 + +1.6
738,378 - -0.3
738,478 + +0.7
738,523 - -0.6
738,572 + +0.8
738,595 + -0.5
738,710 + -1.1
738,837 - -0.7
738,876 + +2.1
738,965 - -0.1
739,086 + +1.8
739,136 + -0.6
739,228 + 11042 mRNA_2674 0.11 +0.2
739,245 - 11042 mRNA_2674 0.12 +0.4
739,265 - 11042 mRNA_2674 0.12 +0.6
739,588 + 11042 mRNA_2674 0.21 -1.7
739,601 + 11042 mRNA_2674 0.21 +0.5
739,857 + 11042 mRNA_2674 0.28 +0.0
739,999 - 11042 mRNA_2674 0.32 -0.2
740,008 + 11042 mRNA_2674 0.32 -2.2
740,012 + 11042 mRNA_2674 0.32 +0.3
740,294 + 11042 mRNA_2674 0.39 -0.0
740,456 + 11042 mRNA_2674 0.44 +1.2
740,459 + 11042 mRNA_2674 0.44 -0.3
740,503 - 11042 mRNA_2674 0.45 -0.8
740,585 - 11042 mRNA_2674 0.47 +0.1
741,123 + 11042 mRNA_2674 0.61 -1.1
741,149 + 11042 mRNA_2674 0.62 -0.8
741,195 - 11042 mRNA_2674 0.63 -0.0
741,199 + 11042 mRNA_2674 0.63 +0.0
741,279 - 11042 mRNA_2674 0.65 -0.1
741,289 - 11042 mRNA_2674 0.66 +0.3
741,435 - 11042 mRNA_2674 0.70 +2.6
741,481 - 11042 mRNA_2674 0.71 +0.2
741,519 + 11042 mRNA_2674 0.72 -0.0
741,878 + 11042 mRNA_2674 0.81 -0.7
742,326 - -0.3
742,334 - -0.0
742,338 + +0.7
742,390 - +0.8
742,638 + +0.2
742,664 - +0.4
743,026 + +1.4
743,045 - -0.2
743,048 + +0.2
743,067 + +0.3
743,223 + +1.0
743,317 - -0.7
743,354 + +1.9
743,365 - +1.3

Or see this region's nucleotide sequence