Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2677

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11045 and 11046 are separated by 628 nucleotides mRNA_2677: 11045 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 756,988 to 757,590 11045 mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758,219 to 759,317 11046

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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756,328 - +1.3
756,620 + -0.3
756,623 - -0.4
757,003 - -2.8
757,318 - 11045 mRNA_2677 0.55 +1.9
757,325 + 11045 mRNA_2677 0.56 +1.0
757,355 - 11045 mRNA_2677 0.61 +0.5
757,424 + 11045 mRNA_2677 0.72 +1.7
757,462 - 11045 mRNA_2677 0.79 +1.0
757,640 - +0.4
757,737 + +0.4
757,747 - +0.7
757,803 - +0.5
757,880 + -0.7
757,886 - +0.2
757,913 - -2.9
758,065 - -0.2
758,221 - -2.3
758,228 + -0.5
758,229 + +0.1
758,318 - -2.0
758,407 + 11046 mRNA_2678 0.17 +0.4

Or see this region's nucleotide sequence