Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2679

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11046 and 11047 are separated by 71 nucleotides11047 and 11048 are separated by 495 nucleotides mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758,219 to 759,317 11046 mRNA_2679: 11047 - K14262 DUG2 di- and tripeptidase, at 759,389 to 763,569 11047 mRNA_2680: 11048 - Hypothetical Protein, at 764,065 to 765,232 11048

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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758,407 + 11046 mRNA_2678 0.17 +0.4
758,710 - 11046 mRNA_2678 0.45 -1.2
758,793 + 11046 mRNA_2678 0.52 -0.2
759,076 + 11046 mRNA_2678 0.78 +0.1
759,078 - 11046 mRNA_2678 0.78 -0.4
759,176 + 11046 mRNA_2678 0.87 -0.1
759,239 + +0.2
759,241 + -1.3
759,271 + -0.7
759,271 + +1.4
759,383 - -0.4
759,421 + -0.3
759,517 + -0.3
759,811 - 11047 mRNA_2679 0.10 +0.5
759,835 + 11047 mRNA_2679 0.11 -0.2
759,855 + 11047 mRNA_2679 0.11 +0.8
759,940 - 11047 mRNA_2679 0.13 -0.8
759,941 + 11047 mRNA_2679 0.13 +0.9
760,064 - 11047 mRNA_2679 0.16 +0.1
760,100 - 11047 mRNA_2679 0.17 -0.4
760,117 + 11047 mRNA_2679 0.17 -0.1
760,244 + 11047 mRNA_2679 0.20 +0.5
760,423 - 11047 mRNA_2679 0.25 -0.1
760,604 - 11047 mRNA_2679 0.29 -1.0
760,853 - 11047 mRNA_2679 0.35 -0.2
760,871 + 11047 mRNA_2679 0.35 +0.1
761,398 - 11047 mRNA_2679 0.48 -2.5
761,398 - 11047 mRNA_2679 0.48 +1.8
761,452 + 11047 mRNA_2679 0.49 -0.2
761,557 - 11047 mRNA_2679 0.52 +0.6
762,322 + 11047 mRNA_2679 0.70 +0.0
762,495 - 11047 mRNA_2679 0.74 -2.5
762,630 + 11047 mRNA_2679 0.78 +0.3
762,689 - 11047 mRNA_2679 0.79 -0.1
762,737 + 11047 mRNA_2679 0.80 +0.2
762,920 - 11047 mRNA_2679 0.84 -1.6
763,036 - 11047 mRNA_2679 0.87 -0.9
763,041 + 11047 mRNA_2679 0.87 +0.1
763,175 + +0.1
763,187 + -0.3
763,314 - -0.1
763,333 - -1.8
763,484 + +0.3
763,490 + +0.0
763,530 + -0.5
763,628 + -0.4
763,629 + -3.1
763,684 + +0.6
763,755 + +0.7
763,767 - -1.6
763,789 - -0.4
763,932 - -0.0
764,075 - +0.4
764,105 - -0.8
764,111 + -2.0
764,269 + 11048 mRNA_2680 0.17 +0.9
764,478 - 11048 mRNA_2680 0.35 +0.4
764,489 - 11048 mRNA_2680 0.36 +0.1
764,490 - 11048 mRNA_2680 0.36 +0.7
764,532 + 11048 mRNA_2680 0.40 -0.2

Or see this region's nucleotide sequence