Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1 + +0.8
28 + +0.1
28 + +0.1
37 + -0.3
37 + +0.1
38 + -0.9
44 + -0.8
48 - +1.3
49 + -0.2
49 + +0.4
49 + -2.0
49 + -1.2
49 + -0.6
49 + -0.3
49 - +0.3
52 + -2.8
54 - -0.7
54 - +0.7
58 + -0.9
62 + +0.1
70 - -1.6
73 + +0.5
74 - +2.0
74 + -0.6
112 - +0.7
120 - -0.7
138 + -1.1
142 + -0.2
142 + +0.4
142 + +0.8
144 + +0.3
145 - +0.4
147 + -0.3
152 + -0.3
159 + +0.4
159 - -0.5
163 + +1.5
169 - +0.6
170 + -0.9
171 - +0.1
173 + +0.1
175 - -1.1
176 + -1.1
177 + -0.9
183 + -1.1
193 + -0.9
205 + -1.6
231 + +0.5
232 + -0.7
235 - -2.2
252 - -0.5
259 + +0.4
259 + +0.3
259 + +0.5
262 - +0.7
269 + -0.8
273 + +0.2
275 - -0.1
289 + -0.6
299 + +0.4
312 - -2.1
339 + -1.2
352 + -0.5
357 + -0.9
358 + +1.0
368 - -2.8
417 - +1.5
429 + +1.2
434 + +0.5
445 + -0.2
462 + -1.7
462 + -0.0
502 + -0.7
529 - +0.3
540 - +1.1
561 + +1.1
584 + -0.6
584 - -1.4
584 + -1.4
633 + +1.0
636 + -0.6
646 + -0.0
703 - -1.9
736 - +0.0
772 - 11054 mRNA_2686 0.10 -3.3
845 - 11054 mRNA_2686 0.13 +1.2
871 + 11054 mRNA_2686 0.14 +1.4
911 + 11054 mRNA_2686 0.16 +0.6
919 - 11054 mRNA_2686 0.16 -0.5
922 + 11054 mRNA_2686 0.16 -0.5
937 - 11054 mRNA_2686 0.17 +2.1
946 - 11054 mRNA_2686 0.17 +2.1
1,039 + 11054 mRNA_2686 0.21 -1.8
1,042 - 11054 mRNA_2686 0.21 -0.1
1,056 + 11054 mRNA_2686 0.21 -0.4
1,056 + 11054 mRNA_2686 0.21 +0.9
1,059 - 11054 mRNA_2686 0.21 -1.0
1,059 - 11054 mRNA_2686 0.21 +0.3
1,079 + 11054 mRNA_2686 0.22 +0.5
1,089 + 11054 mRNA_2686 0.22 +0.3
1,090 - 11054 mRNA_2686 0.22 -0.3
1,099 - 11054 mRNA_2686 0.23 -0.1
1,116 - 11054 mRNA_2686 0.24 -0.3
1,219 - 11054 mRNA_2686 0.28 +1.9
1,230 + 11054 mRNA_2686 0.28 -0.0
1,258 - 11054 mRNA_2686 0.29 -0.1
1,270 - 11054 mRNA_2686 0.29 -0.6
1,272 + 11054 mRNA_2686 0.30 +1.0
1,324 + 11054 mRNA_2686 0.32 -0.5
1,351 + 11054 mRNA_2686 0.33 -1.3
1,464 + 11054 mRNA_2686 0.37 +0.8
1,508 + 11054 mRNA_2686 0.39 -0.7
1,514 - 11054 mRNA_2686 0.39 -0.3
1,611 + 11054 mRNA_2686 0.43 -0.7
1,642 + 11054 mRNA_2686 0.44 +0.8
1,671 + 11054 mRNA_2686 0.45 +0.3
1,680 + 11054 mRNA_2686 0.45 -1.3
1,683 - 11054 mRNA_2686 0.46 +1.8
1,684 + 11054 mRNA_2686 0.46 -0.3
1,699 + 11054 mRNA_2686 0.46 +1.1
1,836 + 11054 mRNA_2686 0.51 +0.3
1,912 + 11054 mRNA_2686 0.54 -1.4
1,961 - 11054 mRNA_2686 0.56 -1.6
2,068 - 11054 mRNA_2686 0.60 +2.1
2,071 - 11054 mRNA_2686 0.61 +0.4
2,079 + 11054 mRNA_2686 0.61 -0.6
2,096 - 11054 mRNA_2686 0.62 -0.3
2,112 + 11054 mRNA_2686 0.62 -0.6
2,128 + 11054 mRNA_2686 0.63 -0.2
2,140 + 11054 mRNA_2686 0.63 +0.1
2,141 - 11054 mRNA_2686 0.63 +1.2
2,158 + 11054 mRNA_2686 0.64 -3.3
2,196 + 11054 mRNA_2686 0.65 -0.9
2,238 + 11054 mRNA_2686 0.67 -0.2
2,250 - 11054 mRNA_2686 0.67 -0.5
2,271 + 11054 mRNA_2686 0.68 +0.2
2,404 - 11054 mRNA_2686 0.73 -0.8
2,419 + 11054 mRNA_2686 0.74 +0.2
2,442 - 11054 mRNA_2686 0.75 -0.4
2,444 - 11054 mRNA_2686 0.75 +0.6
2,534 - 11054 mRNA_2686 0.79 -1.8
2,547 - 11054 mRNA_2686 0.79 -1.9
2,564 + 11054 mRNA_2686 0.80 +0.5
2,685 - 11054 mRNA_2686 0.84 -0.1
2,806 + 11054 mRNA_2686 0.89 +1.3
2,806 - 11054 mRNA_2686 0.89 +0.4
2,814 - 11054 mRNA_2686 0.89 -0.7
2,938 + -0.4
2,971 + -1.2
2,984 - +1.2
3,056 - -1.0
3,090 + -1.7
3,127 + -0.5
3,135 - +0.6
3,141 + +0.8
3,282 + -1.7
3,380 + +0.3
3,409 - -0.0

Or see this region's nucleotide sequence