Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2715

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11082 and 11083 are separated by 541 nucleotides11083 and 11084 are separated by 66 nucleotides mRNA_2714: 11082 - KOG2477 Uncharacterized conserved protein, at 63,364 to 66,371 11082 mRNA_2715: 11083 - Hypothetical Protein, at 66,913 to 70,114 11083 mRNA_2716: 11084 - Hypothetical Protein, at 70,181 to 71,077 11084

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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66,052 - 11082 mRNA_2714 0.89 +0.3
66,444 - +0.8
66,497 - +0.6
66,531 - +2.5
66,643 + -0.7
66,788 - +0.4
66,919 - +0.8
66,979 + +1.1
66,981 - -1.3
67,410 + 11083 mRNA_2715 0.16 -0.4
67,591 - 11083 mRNA_2715 0.21 +0.5
68,134 - 11083 mRNA_2715 0.38 -1.5
68,165 - 11083 mRNA_2715 0.39 -0.0
68,901 - 11083 mRNA_2715 0.62 -1.4
68,920 + 11083 mRNA_2715 0.63 -1.5
69,278 + 11083 mRNA_2715 0.74 +2.0
69,392 + 11083 mRNA_2715 0.77 -0.0
69,400 + 11083 mRNA_2715 0.78 +0.1
69,473 + 11083 mRNA_2715 0.80 -0.8
69,553 + 11083 mRNA_2715 0.82 -1.6
69,605 - 11083 mRNA_2715 0.84 -0.8
69,711 + 11083 mRNA_2715 0.87 +0.6
69,741 - 11083 mRNA_2715 0.88 +0.5
69,878 - +0.6
70,150 - +0.7
70,289 + 11084 mRNA_2716 0.12 -0.6
70,292 - 11084 mRNA_2716 0.12 +0.5
70,293 + 11084 mRNA_2716 0.12 -0.5
70,380 + 11084 mRNA_2716 0.22 +0.3
70,625 + 11084 mRNA_2716 0.49 -0.0
70,769 + 11084 mRNA_2716 0.66 -0.1
70,773 - 11084 mRNA_2716 0.66 -0.7
70,958 - 11084 mRNA_2716 0.87 +0.1
71,043 + -0.8

Or see this region's nucleotide sequence