Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2736

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11103 and 11104 are separated by 185 nucleotides11104 and 11105 are separated by 280 nucleotides mRNA_2735: 11103 - K02257 COX10 protoheme IX farnesyltransferase, at 101,262 to 102,881 11103 mRNA_2736: 11104 - K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa, at 103,067 to 104,847 11104 mRNA_2737: 11105 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 105,128 to 106,332 11105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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103,123 + +1.8
104,965 + +0.9
105,222 - -0.5
105,512 + 11105 mRNA_2737 0.32 -0.6
105,613 - 11105 mRNA_2737 0.40 -0.3
105,820 - 11105 mRNA_2737 0.57 +1.8

Or see this region's nucleotide sequence