Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2741

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11108 and 11109 are separated by 326 nucleotides11109 and 11110 are separated by 191 nucleotides mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206 11108 mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114,533 to 117,473 11109 mRNA_2742: 11110 - K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 117,665 to 118,794 11110

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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113,726 - 11108 mRNA_2740 0.58 -0.9
114,001 + 11108 mRNA_2740 0.82 -1.0
114,005 - 11108 mRNA_2740 0.82 -1.0
114,344 + +0.2
114,423 + -0.2
114,528 + -2.3
114,935 - 11109 mRNA_2741 0.14 +1.7
117,610 - -0.6
117,714 - +2.5
117,877 + 11110 mRNA_2742 0.19 +0.9
117,888 - 11110 mRNA_2742 0.20 +0.2

Or see this region's nucleotide sequence