Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2758

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11125 and 11126 are separated by 267 nucleotides11126 and 11127 are separated by 262 nucleotides mRNA_2757: 11125 - Hypothetical Protein, at 149,493 to 150,603 11125 mRNA_2758: 11126 - Hypothetical Protein, at 150,871 to 152,585 11126 mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152,848 to 153,537 11127

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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150,073 - 11125 mRNA_2757 0.52 -1.0
150,389 + 11125 mRNA_2757 0.81 -3.0
150,810 - -0.6
150,823 - +1.9
150,946 + -0.4
150,954 - +0.2
150,960 - -0.4
150,966 + -0.4
150,993 + -0.4
151,254 - 11126 mRNA_2758 0.22 +0.5
151,260 + 11126 mRNA_2758 0.23 -0.6
151,278 + 11126 mRNA_2758 0.24 +0.6
151,406 + 11126 mRNA_2758 0.31 -0.2
151,407 - 11126 mRNA_2758 0.31 +0.8
151,689 - 11126 mRNA_2758 0.48 +0.7
151,717 + 11126 mRNA_2758 0.49 -1.5
151,729 - 11126 mRNA_2758 0.50 +0.1
151,808 - 11126 mRNA_2758 0.55 -0.5
152,412 + 11126 mRNA_2758 0.90 +0.6
152,413 - 11126 mRNA_2758 0.90 -0.2
152,424 - -0.3
152,601 - -0.5
152,733 + +0.4
152,737 + +0.6
152,738 - +0.9
152,743 - -1.0
152,744 + +0.4
152,772 + +0.9

Or see this region's nucleotide sequence