Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2785

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11152 and 11153 are separated by 406 nucleotides11153 and 11154 are separated by 280 nucleotides mRNA_2784: 11152 - K20241 WDR44, RAB11BP WD repeat-containing protein 44, at 204,617 to 208,124 11152 mRNA_2785: 11153 - ProSiteProfiles-CRIB domain profile.-PS50108, at 208,531 to 209,463 11153 mRNA_2786: 11154 - Hypothetical Protein, at 209,744 to 210,942 11154

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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207,613 - 11152 mRNA_2784 0.85 +1.6
207,771 - 11152 mRNA_2784 0.90 +1.4
207,773 - 11152 mRNA_2784 0.90 +0.9
207,780 + +0.4
207,884 - +0.6
208,021 - -1.0
208,066 + +0.4
208,508 - -0.3
208,602 - +0.8
208,656 - 11153 mRNA_2785 0.13 +1.4
208,662 + 11153 mRNA_2785 0.14 +2.1
208,691 - 11153 mRNA_2785 0.17 -1.2
208,790 + 11153 mRNA_2785 0.28 +0.2
209,219 - 11153 mRNA_2785 0.74 -0.1
209,278 + 11153 mRNA_2785 0.80 +1.7
209,374 - -0.7
210,026 - 11154 mRNA_2786 0.24 +0.8
210,107 + 11154 mRNA_2786 0.30 -0.5
210,397 - 11154 mRNA_2786 0.54 -0.2
210,407 + 11154 mRNA_2786 0.55 -0.2
210,431 + 11154 mRNA_2786 0.57 +0.4

Or see this region's nucleotide sequence