Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2799

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11166 and 11167 are separated by 238 nucleotides11167 and 11168 are separated by 479 nucleotides mRNA_2798: 11166 - K03537 POP5 ribonuclease P/MRP protein subunit POP5, at 241,326 to 242,097 11166 mRNA_2799: 11167 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 242,336 to 245,006 11167 mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245,486 to 250,213 11168

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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242,005 - 11166 mRNA_2798 0.88 -0.2
242,058 + -0.0
242,522 + +0.3
242,537 + -0.6
242,726 + 11167 mRNA_2799 0.15 -1.2
243,124 - 11167 mRNA_2799 0.30 -0.2
243,183 - 11167 mRNA_2799 0.32 -0.7
243,318 + 11167 mRNA_2799 0.37 +0.4
243,441 - 11167 mRNA_2799 0.41 +1.9
243,469 + 11167 mRNA_2799 0.42 -0.1
243,504 + 11167 mRNA_2799 0.44 +0.2
243,763 + 11167 mRNA_2799 0.53 -1.1
243,849 - 11167 mRNA_2799 0.57 +0.1
243,992 - 11167 mRNA_2799 0.62 +0.3
244,114 + 11167 mRNA_2799 0.67 -0.9
244,153 + 11167 mRNA_2799 0.68 +1.9
244,212 - 11167 mRNA_2799 0.70 -0.6
244,313 - 11167 mRNA_2799 0.74 -0.1
244,321 - 11167 mRNA_2799 0.74 +0.7
244,426 - 11167 mRNA_2799 0.78 -1.3
244,595 - 11167 mRNA_2799 0.85 -0.2
244,891 - -0.9
244,894 - -0.9
244,897 - +0.6
244,911 + -1.0
244,915 - +0.8
244,920 + +0.1
244,934 - -0.4
244,953 + +0.0
244,959 + +0.4
245,047 + -2.4
245,058 - -1.8
245,058 + -0.9
245,061 - +0.2
245,079 + -0.4
245,081 + -0.2
245,083 - +0.8
245,083 + +0.3
245,085 + -0.1
245,091 + +0.4
245,092 + +0.4
245,100 - -0.7
245,105 - -1.2
245,111 - +0.6
245,117 + -0.7
245,175 - +0.1
245,183 + +0.2
245,184 - -0.8
245,195 - -3.2
245,212 - -2.8
245,216 + +1.9
245,222 + -0.0
245,222 - +1.6
245,226 + +0.4
245,369 - +1.7
245,532 + -0.2
245,626 + -2.4
245,669 + +1.4
245,677 - -1.3
245,769 - +0.7
245,770 + +1.2
245,816 + +0.1
245,843 + +1.3
245,849 + -0.3
245,885 - +0.5
245,936 - +0.2

Or see this region's nucleotide sequence