Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2820

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11187 and 11188 are separated by 188 nucleotides mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297,100 to 297,771 11187 mRNA_2820: 11188 - HMMPfam-2-oxoacid dehydrogenases acyltransferase (catalytic domain)-PF00198,HMMPfam-Biotin-requiring enzyme-PF00364,HMMPfam-e3 binding domain-PF02817,SUPERFAMILY--SSF47005,SUPERFAMILY--SSF51230,SUPERFAMILY--SSF52777, at 297,960 to 299,453 11188

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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296,989 - -0.2
297,018 + -0.8
297,018 - +0.4
297,436 - 11187 mRNA_2819 0.50 +0.4
297,439 - 11187 mRNA_2819 0.50 +1.6
297,456 + 11187 mRNA_2819 0.53 +0.9
297,479 + 11187 mRNA_2819 0.56 +0.8
297,862 + +0.6
297,966 + +0.4
298,039 + -0.4
298,068 + -1.4
298,144 - 11188 mRNA_2820 0.12 -1.5

Or see this region's nucleotide sequence