Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2824

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11191 and 11192 are separated by 104 nucleotides mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770 11191 mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755 11192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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303,939 - 11191 mRNA_2823 0.36 +0.3
303,945 + 11191 mRNA_2823 0.36 +0.3
303,952 - 11191 mRNA_2823 0.37 +1.4
303,962 + 11191 mRNA_2823 0.37 -1.3
303,964 + 11191 mRNA_2823 0.37 -0.4
304,045 - 11191 mRNA_2823 0.44 +1.1
304,090 + 11191 mRNA_2823 0.47 -0.7
304,091 - 11191 mRNA_2823 0.47 -0.1
304,118 - 11191 mRNA_2823 0.49 -0.3
304,131 + 11191 mRNA_2823 0.50 +0.4
304,134 - 11191 mRNA_2823 0.51 -0.7
304,237 - 11191 mRNA_2823 0.59 +0.6
304,294 - 11191 mRNA_2823 0.63 -0.6
304,294 - 11191 mRNA_2823 0.63 +0.4
304,300 + 11191 mRNA_2823 0.64 +0.4
304,300 + 11191 mRNA_2823 0.64 +1.9
304,321 - 11191 mRNA_2823 0.65 +1.6
304,386 - 11191 mRNA_2823 0.70 +1.5
304,400 + 11191 mRNA_2823 0.71 -0.2
304,485 - 11191 mRNA_2823 0.78 +1.2
304,526 - 11191 mRNA_2823 0.81 -1.1
304,555 + 11191 mRNA_2823 0.83 +0.9
304,582 + 11191 mRNA_2823 0.85 -0.2
304,832 + +0.5
304,832 + -0.1
305,177 - 11192 mRNA_2824 0.34 -0.1
305,269 - 11192 mRNA_2824 0.45 -1.7
305,467 - 11192 mRNA_2824 0.67 -0.5
305,590 + 11192 mRNA_2824 0.81 +0.0
305,739 - +0.2
306,149 + +1.2
306,422 - +0.1
306,435 + -0.2
306,453 - +0.6
306,459 - +0.1
306,464 + -0.5
306,472 + -1.6
306,602 - -0.1
306,616 - +0.4
306,617 - -0.4
306,620 + +0.4
306,633 - +0.8
306,678 + +1.1
306,683 + +2.7
306,686 - +0.1
306,726 - +0.7
306,750 + +0.8

Or see this region's nucleotide sequence