Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2893

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11260 and 11261 are separated by 364 nucleotides11261 and 11262 are separated by 715 nucleotides mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471,192 to 473,300 11260 mRNA_2893: 11261 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 473,665 to 474,267 11261 mRNA_2894: 11262 - SUPERFAMILY--SSF52047, at 474,983 to 476,277 11262

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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472,766 - 11260 mRNA_2892 0.75 -2.1
472,768 - 11260 mRNA_2892 0.75 -0.5
472,786 - 11260 mRNA_2892 0.76 -1.5
472,792 + 11260 mRNA_2892 0.76 +0.3
472,793 + 11260 mRNA_2892 0.76 -0.3
472,800 - 11260 mRNA_2892 0.76 +1.1
472,809 + 11260 mRNA_2892 0.77 -0.2
472,838 - 11260 mRNA_2892 0.78 +3.0
472,839 + 11260 mRNA_2892 0.78 -1.2
472,845 + 11260 mRNA_2892 0.78 -0.5
472,859 - 11260 mRNA_2892 0.79 -0.6
472,886 + 11260 mRNA_2892 0.80 +0.0
472,911 - 11260 mRNA_2892 0.82 -1.2
472,918 - 11260 mRNA_2892 0.82 -0.6
472,924 + 11260 mRNA_2892 0.82 +0.0
473,071 - 11260 mRNA_2892 0.89 -0.7
473,076 - 11260 mRNA_2892 0.89 -0.8
473,094 + +0.6
473,267 - -0.5
473,276 - +1.1
473,389 + -0.2
473,449 + +0.1
473,463 - +1.2
473,471 + -0.5
473,494 + -0.4
473,499 - -0.0
473,499 - -0.8
473,501 - +0.2
473,505 - -1.7
473,525 + -1.6
473,532 + +0.2
473,532 - -0.5
473,533 - +0.6
473,541 - -0.6
473,544 - -0.1
473,547 + +0.2
473,550 - +1.6
473,551 - +1.1
473,552 + -0.2
473,552 + +0.3
473,553 - +0.0
473,562 + -0.1
473,564 - -0.7
473,567 - +1.0
473,570 - -0.6
473,572 + -0.7
473,578 - -0.1
473,585 + +1.4
473,720 + -0.5
473,728 + 11261 mRNA_2893 0.10 +1.4
473,858 + 11261 mRNA_2893 0.32 -0.1
473,872 + 11261 mRNA_2893 0.34 +0.2
473,884 + 11261 mRNA_2893 0.36 +1.6
475,240 + 11262 mRNA_2894 0.20 -1.0

Or see this region's nucleotide sequence