Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2900

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11268 and 11269 are separated by 671 nucleotides mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493,675 to 494,245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494,917 to 497,480 11269

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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492,686 - +0.0
492,716 - +0.5
492,778 + +0.1
492,872 - +1.2
492,889 + -0.8
493,340 - +0.7
493,379 - +0.6
493,640 - -0.1
494,113 + 11268 mRNA_2900 0.77 -0.6
494,367 + -0.1
494,433 + +1.2
494,489 + +0.1
494,513 + +0.0
494,547 + -0.5
494,604 - -1.4
494,604 - -1.0
494,635 - -1.1
494,646 + -0.3
494,651 + -0.1
494,655 + +1.5
494,655 - +2.0
494,656 + +0.1
494,684 + +0.9
494,684 - -0.5
494,687 - +0.1
494,692 - -0.1
494,699 - -0.7
494,700 - -0.1
494,701 + +0.2
494,717 + +1.8
494,722 - -0.3
494,816 + +0.1
494,818 - +2.4
494,837 - +0.9
494,851 - +0.2
494,861 + +0.3
494,874 + +0.8
494,927 - +0.3
494,988 - +0.6
495,011 - -0.6
495,016 - +1.7
495,052 + -1.4
495,129 - +0.4
495,162 - +1.2

Or see this region's nucleotide sequence