Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2911

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11278 and 11279 are separated by 149 nucleotides11279 and 11280 are separated by 365 nucleotides mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320 11278 mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587 11279 mRNA_2912: 11280 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 521,953 to 523,755 11280

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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519,499 + 11278 mRNA_2910 0.75 +0.5
519,797 - 11278 mRNA_2910 0.84 +0.0
519,810 + 11278 mRNA_2910 0.84 -0.1
519,974 + 11278 mRNA_2910 0.89 +0.9
520,081 + +2.0
520,093 - -1.3
520,093 - +0.3
520,102 + -0.7
521,431 - 11279 mRNA_2911 0.86 +0.3
521,670 - -0.5
522,165 - 11280 mRNA_2912 0.12 -0.2

Or see this region's nucleotide sequence