Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2953

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11320 and 11321 are separated by 72 nucleotides mRNA_2952: 11320 - Hypothetical Protein, at 636,542 to 638,719 11320 mRNA_2953: 11321 - Hypothetical Protein, at 638,792 to 639,757 11321

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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638,080 + 11320 mRNA_2952 0.71 +0.6
638,081 + 11320 mRNA_2952 0.71 -0.0
638,261 - 11320 mRNA_2952 0.79 -0.2
638,760 - -1.2
639,268 + 11321 mRNA_2953 0.49 +0.8
639,369 - 11321 mRNA_2953 0.60 +0.3
639,377 - 11321 mRNA_2953 0.61 +1.1
639,516 - 11321 mRNA_2953 0.75 -0.0
639,520 - 11321 mRNA_2953 0.75 +0.2
639,553 + 11321 mRNA_2953 0.79 +1.3
639,703 + -0.1
639,810 - -0.5
639,815 - -0.2
639,855 - -0.2
639,922 - +0.5
640,129 - +0.3
640,412 + -0.6
640,457 + +1.3
640,481 - +2.5
640,512 - +0.3
640,517 - +0.6
640,517 + -0.4
640,521 - +1.5
640,535 - +0.2
640,539 + -0.5
640,539 + +0.3
640,542 - +0.2
640,553 - +0.5
640,554 + -0.2
640,573 - -2.0
640,585 - +1.2
640,592 + +0.4
640,606 - -0.5
640,616 - +0.5
640,616 - +1.1
640,622 - +0.5
640,622 - +0.3
640,623 + -1.0
640,625 + -0.7
640,626 - -0.7
640,627 + -0.7
640,627 + -0.2
640,631 + +0.3
640,631 + -1.3
640,633 - +2.5
640,638 - +0.8
640,640 - -1.3
640,641 + +0.1
640,644 + +0.9
640,665 + -0.6
640,666 - +1.3
640,667 - -0.1
640,669 + -0.2
640,688 + -0.6
640,691 + +1.1
640,691 - +1.3
640,692 - +0.6
640,693 + +0.3
640,693 - +0.2
640,709 + +0.8
640,714 - -1.9
640,717 + +0.5
640,718 + +0.6
640,718 - +0.7
640,721 + -2.5
640,721 + +0.1
640,721 - +0.1
640,725 + +0.8
640,732 - -0.2
640,737 - -0.9

Or see this region's nucleotide sequence